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Enterovirus D68 - Springer Nature

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Last Updated: 03 January 2022

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High throughput sequencing of whole transcriptome and construct of ceRNA regulatory network in RD cells infected with enterovirus D68

Nonetheless, the mechanism of these non-coding RNAs in conditions triggered by enterovirus d68 remains vague. We discovered the targeting relationship in between three ncRNAs and mRNA utilizing bioinformatics approaches, and after that constructed a ceRNA governing network focused on miRNA. Create a healthy protein communication network to seek for center mRNAs and find out more about healthy protein-- healthy protein interactions. The impacts of Fos and ARRDC3 on infection replication were confirmed making use of RT-qPCR, virus titer, Western blotting. A single lncRNA or circRNA can be attached with numerous miRNAs, which subsequently coregulate added mRNAs, according to the ceRNA regulative network. The bulk of DEmRNAs were shown to be linked to DNA binding, transcription regulation by RNA polymerase II, transcription element, MAPK signaling paths, Hippo signal path, and apoptosis pathway, according to GO and KEGG pathway enrichment evaluation. The center mRNAs with EGR1, Fos and Jun as the core were evaluated with PPI interaction network. We preliminarily demonstrated that the Fos and ARRDC3 genes can reduce EV-D68 viral replication in order to more verify the results of complete transcriptome sequencing. Verdict The results of whole transcriptome analysis after EV-D68 infection of RD cells were first reported in this research, and for the very first time, a ceRNA regulation network consisting of miRNA at its center was developed for the first time. The Fos and ARRDC3 genetics were found to prevent viral in RD cells. This study develops unique insight host response during EV-D68 infection and better explored potential medicine targets.

Source link: https://doi.org/10.1186/s12985-021-01686-x

* Please keep in mind that all text is summarized by machine, we do not bear any responsibility, and you should always check original source before taking any actions

* Please keep in mind that all text is summarized by machine, we do not bear any responsibility, and you should always check original source before taking any actions